PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27366.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 271aa    MW: 31638.7 Da    PI: 7.1509
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27366.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll++i+
    KHN27366.1  26 FLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLLCEIH 113
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KHN27366.1 114 RRKA 117
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.54E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAFTLDRFEE NMVFTLESQK SVPAPFLTKT YQLVDDPHTD HIVSWGEDET TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FRKGAKHLLC EIHRRKAPQQ  120
HHQLFHDQSP SQIFQQDENL CWLDTPLPSP KPNTDILTAL SEDNQRLRRK NFMLLSELSH  180
MKSLYNDIIY FIQNHVKPPP FEQRSSSVIP NLVELDSLHE SPNDMGVRRS AKSCVVDKSL  240
ITSTEESNSS VKLFGFPLSG RKRLHPDNTN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-211611511120Heat shock factor protein 1
5d5u_B7e-212111525129Heat shock factor protein 1
5d5v_B7e-212111525129Heat shock factor protein 1
5d5v_D7e-212111525129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969820.0BT096982.1 Soybean clone JCVI-FLGm-21M20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304342.10.0heat stress transcription factor B-4b-like
SwissprotQ9C6359e-88HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0B2R0A20.0A0A0B2R0A2_GLYSO; Heat stress transcription factor B-4
TrEMBLI1NDX70.0I1NDX7_SOYBN; Uncharacterized protein
STRINGGLYMA20G08250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-89heat shock transcription factor B4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]